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Meta-analysis of 20 genome-wide linkage studies evidenced new regions linked to asthma and atopy

Identifieur interne : 007741 ( Main/Exploration ); précédent : 007740; suivant : 007742

Meta-analysis of 20 genome-wide linkage studies evidenced new regions linked to asthma and atopy

Auteurs : Emmanuelle Bouzigon [France] ; Paola Forabosco [Royaume-Uni, Italie] ; Gerard H. Koppelman [Pays-Bas] ; William Ocm Cookson [Royaume-Uni] ; Marie-Hélène Dizier [France] ; David L. Duffy [Australie] ; David M. Evans [Royaume-Uni] ; Manuel Ar Ferreira [Australie] ; Juha Kere [Suède] ; Tarja Laitinen [Finlande] ; Giovanni Malerba [Italie] ; Deborah A. Meyers [États-Unis] ; Miriam Moffatt [Royaume-Uni] ; Nicholas G. Martin [Australie] ; Mandy Y. Ng [Royaume-Uni] ; Pier Franco Pignatti [Italie] ; Mathias Wjst [Allemagne, Italie] ; Francine Kauffmann [France] ; Florence Demenais [France] ; Cathryn M. Lewis [Royaume-Uni]

Source :

RBID : Pascal:10-0271543

Descripteurs français

English descriptors

Abstract

Asthma is caused by a heterogeneous combination of environmental and genetic factors. In the context of GA2LEN (Global Allergy and Asthma European Network), we carried out meta-analyses of almost all genome-wide linkage screens conducted to date in 20 independent populations from different ethnic origins (≥3024 families with ≥ 10027 subjects) for asthma, atopic asthma, bronchial hyper-responsiveness and five atopy-related traits (total immunoglobulin E level, positive skin test response (SPT) to at least one allergen or to House Dust Mite, quantitative score of SPT (SPTQ) and eosinophils (EOS)). We used the genome scan meta-analysis method to assess evidence for linkage within bins of traditionally 30-cM width, and explored the manner in which these results were affected by bin definition. Meta-analyses were conducted in all studies and repeated in families of European ancestry. Genome-wide evidence for linkage was detected for asthma in two regions (2p21-p14 and 6p21) in European families ascertained through two asthmatic sibs. With regard to atopy phenotypes, four regions reached genome-wide significance: 3p25.3-q24 in all families for SPT and three other regions in European families (2q32-q34 for EOS, 5q23-q33 for SPTQ and 17q12-q24 for SPT). Tests of heterogeneity showed consistent evidence of linkage of SPTQ to 3p11-3q21, whereas between-study heterogeneity was detected for asthma in 2p22-p13 and 6p21, and for atopic asthma in 1q23-q25. This large-scale meta-analysis provides an important resource of information that can be used to prioritize further fine-mapping studies and also be integrated with genome-wide association studies to increase power and better interpret the outcomes of these studies.

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<sZ>1 aut.</sZ>
<sZ>19 aut.</sZ>
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<region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
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<s1>Foundation Jean Dausset-Centre d'Etude du Polymorphisme Humain (CEPH)</s1>
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<sZ>1 aut.</sZ>
<sZ>19 aut.</sZ>
</inist:fA14>
<country>France</country>
<placeName>
<region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Forabosco, Paola" sort="Forabosco, Paola" uniqKey="Forabosco P" first="Paola" last="Forabosco">Paola Forabosco</name>
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<country>Royaume-Uni</country>
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<settlement type="city">Londres</settlement>
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<s1>Istituto di Genetica delle Popolazioni-CNR</s1>
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<wicri:noRegion>Istituto di Genetica delle Popolazioni-CNR</wicri:noRegion>
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<name sortKey="Koppelman, Gerard H" sort="Koppelman, Gerard H" uniqKey="Koppelman G" first="Gerard H." last="Koppelman">Gerard H. Koppelman</name>
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<settlement type="city">Londres</settlement>
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<name sortKey="Dizier, Marie Helene" sort="Dizier, Marie Helene" uniqKey="Dizier M" first="Marie-Hélène" last="Dizier">Marie-Hélène Dizier</name>
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<inist:fA14 i1="08">
<s1>INSERM, U535</s1>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>Villejuif</wicri:noRegion>
<wicri:noRegion>U535</wicri:noRegion>
<wicri:noRegion>Villejuif</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<inist:fA14 i1="09">
<s1>Univ Paris-Sud, IFR69</s1>
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<sZ>18 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>Villejuif</wicri:noRegion>
<wicri:noRegion>IFR69</wicri:noRegion>
<wicri:noRegion>Villejuif</wicri:noRegion>
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</author>
<author>
<name sortKey="Duffy, David L" sort="Duffy, David L" uniqKey="Duffy D" first="David L." last="Duffy">David L. Duffy</name>
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<s1>Queensland Institute of Medical Research, Royal Brisbane Hospital</s1>
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<sZ>6 aut.</sZ>
<sZ>8 aut.</sZ>
<sZ>14 aut.</sZ>
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<country>Australie</country>
<wicri:noRegion>Brisbane</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Evans, David M" sort="Evans, David M" uniqKey="Evans D" first="David M." last="Evans">David M. Evans</name>
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<inist:fA14 i1="11">
<s1>Department of Social Medicine, University of Bristol</s1>
<s2>Bristol</s2>
<s3>GBR</s3>
<sZ>7 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<wicri:noRegion>Bristol</wicri:noRegion>
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<author>
<name sortKey="Ferreira, Manuel Ar" sort="Ferreira, Manuel Ar" uniqKey="Ferreira M" first="Manuel Ar" last="Ferreira">Manuel Ar Ferreira</name>
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<inist:fA14 i1="10">
<s1>Queensland Institute of Medical Research, Royal Brisbane Hospital</s1>
<s2>Brisbane</s2>
<s3>AUS</s3>
<sZ>6 aut.</sZ>
<sZ>8 aut.</sZ>
<sZ>14 aut.</sZ>
</inist:fA14>
<country>Australie</country>
<wicri:noRegion>Brisbane</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kere, Juha" sort="Kere, Juha" uniqKey="Kere J" first="Juha" last="Kere">Juha Kere</name>
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<inist:fA14 i1="12">
<s1>Department of Biosciences and Nutrition, Karolinska Institute</s1>
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<s3>SWE</s3>
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</inist:fA14>
<country>Suède</country>
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<settlement type="city">Stockholm</settlement>
<region nuts="2">Svealand</region>
</placeName>
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<author>
<name sortKey="Laitinen, Tarja" sort="Laitinen, Tarja" uniqKey="Laitinen T" first="Tarja" last="Laitinen">Tarja Laitinen</name>
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<s1>Departments of Pulmonary Medicine and Medical Genetics, University of Helsinki</s1>
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<s3>FIN</s3>
<sZ>10 aut.</sZ>
</inist:fA14>
<country>Finlande</country>
<placeName>
<settlement type="city">Helsinki</settlement>
<region type="région" nuts="2">Uusimaa</region>
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<orgName type="university">Université d'Helsinki</orgName>
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<author>
<name sortKey="Malerba, Giovanni" sort="Malerba, Giovanni" uniqKey="Malerba G" first="Giovanni" last="Malerba">Giovanni Malerba</name>
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<s1>Section of Biology and Genetics, Department of Mother and Child, and Biology-Genetics, University of Verona</s1>
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<s3>ITA</s3>
<sZ>11 aut.</sZ>
<sZ>16 aut.</sZ>
</inist:fA14>
<country>Italie</country>
<wicri:noRegion>Verona</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Meyers, Deborah A" sort="Meyers, Deborah A" uniqKey="Meyers D" first="Deborah A." last="Meyers">Deborah A. Meyers</name>
<affiliation wicri:level="1">
<inist:fA14 i1="15">
<s1>Center for Human Genomics, Wake Forest University</s1>
<s2>Winston Salem, NC</s2>
<s3>USA</s3>
<sZ>12 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<wicri:noRegion>Winston Salem, NC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Moffatt, Miriam" sort="Moffatt, Miriam" uniqKey="Moffatt M" first="Miriam" last="Moffatt">Miriam Moffatt</name>
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<inist:fA14 i1="07">
<s1>National Heart Lung Institute, Imperial College</s1>
<s2>London</s2>
<s3>GBR</s3>
<sZ>4 aut.</sZ>
<sZ>13 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Martin, Nicholas G" sort="Martin, Nicholas G" uniqKey="Martin N" first="Nicholas G." last="Martin">Nicholas G. Martin</name>
<affiliation wicri:level="1">
<inist:fA14 i1="10">
<s1>Queensland Institute of Medical Research, Royal Brisbane Hospital</s1>
<s2>Brisbane</s2>
<s3>AUS</s3>
<sZ>6 aut.</sZ>
<sZ>8 aut.</sZ>
<sZ>14 aut.</sZ>
</inist:fA14>
<country>Australie</country>
<wicri:noRegion>Brisbane</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ng, Mandy Y" sort="Ng, Mandy Y" uniqKey="Ng M" first="Mandy Y." last="Ng">Mandy Y. Ng</name>
<affiliation wicri:level="3">
<inist:fA14 i1="16">
<s1>King's College London, MRC SGDP Centre, Institute of Psychiatry</s1>
<s2>London</s2>
<s3>GBR</s3>
<sZ>15 aut.</sZ>
<sZ>20 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Franco Pignatti, Pier" sort="Franco Pignatti, Pier" uniqKey="Franco Pignatti P" first="Pier" last="Franco Pignatti">Pier Franco Pignatti</name>
<affiliation wicri:level="1">
<inist:fA14 i1="14">
<s1>Section of Biology and Genetics, Department of Mother and Child, and Biology-Genetics, University of Verona</s1>
<s2>Verona</s2>
<s3>ITA</s3>
<sZ>11 aut.</sZ>
<sZ>16 aut.</sZ>
</inist:fA14>
<country>Italie</country>
<wicri:noRegion>Verona</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wjst, Mathias" sort="Wjst, Mathias" uniqKey="Wjst M" first="Mathias" last="Wjst">Mathias Wjst</name>
<affiliation wicri:level="1">
<inist:fA14 i1="17">
<s1>Institute of Experimental Pneumology, Helmholtz Zentrum München, German Research Center for Environmental Health</s1>
<s2>Neuherberg</s2>
<s3>DEU</s3>
<sZ>17 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>Neuherberg</wicri:noRegion>
<wicri:noRegion>German Research Center for Environmental Health</wicri:noRegion>
<wicri:noRegion>Neuherberg</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<inist:fA14 i1="18">
<s1>Institute of Genetic Medicine, EURAC research</s1>
<s2>Bozen</s2>
<s3>ITA</s3>
<sZ>17 aut.</sZ>
</inist:fA14>
<country>Italie</country>
<wicri:noRegion>Bozen</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kauffmann, Francine" sort="Kauffmann, Francine" uniqKey="Kauffmann F" first="Francine" last="Kauffmann">Francine Kauffmann</name>
<affiliation wicri:level="1">
<inist:fA14 i1="09">
<s1>Univ Paris-Sud, IFR69</s1>
<s2>Villejuif</s2>
<s3>FRA</s3>
<sZ>5 aut.</sZ>
<sZ>18 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>Villejuif</wicri:noRegion>
<wicri:noRegion>IFR69</wicri:noRegion>
<wicri:noRegion>Villejuif</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<inist:fA14 i1="19">
<s1>INSERM, U780</s1>
<s2>Villejuif</s2>
<s3>FRA</s3>
<sZ>18 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>Villejuif</wicri:noRegion>
<wicri:noRegion>U780</wicri:noRegion>
<wicri:noRegion>Villejuif</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Demenais, Florence" sort="Demenais, Florence" uniqKey="Demenais F" first="Florence" last="Demenais">Florence Demenais</name>
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<inist:fA14 i1="01">
<s1>INSERM, U946</s1>
<s2>Paris</s2>
<s3>FRA</s3>
<sZ>1 aut.</sZ>
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<country>France</country>
<placeName>
<region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
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<affiliation wicri:level="3">
<inist:fA14 i1="02">
<s1>Universté Paris Diderot, Paris 7, Institut Universitaire d'Hématologie</s1>
<s2>Paris</s2>
<s3>FRA</s3>
<sZ>1 aut.</sZ>
<sZ>19 aut.</sZ>
</inist:fA14>
<country>France</country>
<placeName>
<region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3">
<inist:fA14 i1="03">
<s1>Foundation Jean Dausset-Centre d'Etude du Polymorphisme Humain (CEPH)</s1>
<s2>Paris</s2>
<s3>FRA</s3>
<sZ>1 aut.</sZ>
<sZ>19 aut.</sZ>
</inist:fA14>
<country>France</country>
<placeName>
<region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Lewis, Cathryn M" sort="Lewis, Cathryn M" uniqKey="Lewis C" first="Cathryn M." last="Lewis">Cathryn M. Lewis</name>
<affiliation wicri:level="3">
<inist:fA14 i1="04">
<s1>King's College London, Department of Medical and Molecular Genetics</s1>
<s2>London</s2>
<s3>GBR</s3>
<sZ>2 aut.</sZ>
<sZ>20 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
<affiliation wicri:level="3">
<inist:fA14 i1="16">
<s1>King's College London, MRC SGDP Centre, Institute of Psychiatry</s1>
<s2>London</s2>
<s3>GBR</s3>
<sZ>15 aut.</sZ>
<sZ>20 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
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</analytic>
<series>
<title level="j" type="main">European journal of human genetics</title>
<title level="j" type="abbreviated">Eur. j. hum. genet.</title>
<idno type="ISSN">1018-4813</idno>
<imprint>
<date when="2010">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt>
<title level="j" type="main">European journal of human genetics</title>
<title level="j" type="abbreviated">Eur. j. hum. genet.</title>
<idno type="ISSN">1018-4813</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Allergy</term>
<term>Asthma</term>
<term>Atopy</term>
<term>Genetic determinism</term>
<term>Genetic linkage</term>
<term>Genetic mapping</term>
<term>Genetics</term>
<term>Genome</term>
<term>Immunopathology</term>
<term>Metaanalysis</term>
<term>Pathogenesis</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr">
<term>Asthme</term>
<term>Atopie</term>
<term>Métaanalyse</term>
<term>Génome</term>
<term>Liaison génétique</term>
<term>Pathogénie</term>
<term>Déterminisme génétique</term>
<term>Carte génétique</term>
<term>Allergie</term>
<term>Immunopathologie</term>
<term>Génétique</term>
</keywords>
<keywords scheme="Wicri" type="topic" xml:lang="fr">
<term>Allergie</term>
<term>Génétique</term>
</keywords>
</textClass>
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<front>
<div type="abstract" xml:lang="en">Asthma is caused by a heterogeneous combination of environmental and genetic factors. In the context of GA2LEN (Global Allergy and Asthma European Network), we carried out meta-analyses of almost all genome-wide linkage screens conducted to date in 20 independent populations from different ethnic origins (≥3024 families with ≥ 10027 subjects) for asthma, atopic asthma, bronchial hyper-responsiveness and five atopy-related traits (total immunoglobulin E level, positive skin test response (SPT) to at least one allergen or to House Dust Mite, quantitative score of SPT (SPTQ) and eosinophils (EOS)). We used the genome scan meta-analysis method to assess evidence for linkage within bins of traditionally 30-cM width, and explored the manner in which these results were affected by bin definition. Meta-analyses were conducted in all studies and repeated in families of European ancestry. Genome-wide evidence for linkage was detected for asthma in two regions (2p21-p14 and 6p21) in European families ascertained through two asthmatic sibs. With regard to atopy phenotypes, four regions reached genome-wide significance: 3p25.3-q24 in all families for SPT and three other regions in European families (2q32-q34 for EOS, 5q23-q33 for SPTQ and 17q12-q24 for SPT). Tests of heterogeneity showed consistent evidence of linkage of SPTQ to 3p11-3q21, whereas between-study heterogeneity was detected for asthma in 2p22-p13 and 6p21, and for atopic asthma in 1q23-q25. This large-scale meta-analysis provides an important resource of information that can be used to prioritize further fine-mapping studies and also be integrated with genome-wide association studies to increase power and better interpret the outcomes of these studies.</div>
</front>
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<li>Allemagne</li>
<li>Australie</li>
<li>Finlande</li>
<li>France</li>
<li>Italie</li>
<li>Pays-Bas</li>
<li>Royaume-Uni</li>
<li>Suède</li>
<li>États-Unis</li>
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<li>Angleterre</li>
<li>Grand Londres</li>
<li>Groningue (province)</li>
<li>Svealand</li>
<li>Uusimaa</li>
<li>Île-de-France</li>
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<li>Groningue</li>
<li>Helsinki</li>
<li>Londres</li>
<li>Paris</li>
<li>Stockholm</li>
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<li>Université d'Helsinki</li>
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<region name="Île-de-France">
<name sortKey="Bouzigon, Emmanuelle" sort="Bouzigon, Emmanuelle" uniqKey="Bouzigon E" first="Emmanuelle" last="Bouzigon">Emmanuelle Bouzigon</name>
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<name sortKey="Bouzigon, Emmanuelle" sort="Bouzigon, Emmanuelle" uniqKey="Bouzigon E" first="Emmanuelle" last="Bouzigon">Emmanuelle Bouzigon</name>
<name sortKey="Bouzigon, Emmanuelle" sort="Bouzigon, Emmanuelle" uniqKey="Bouzigon E" first="Emmanuelle" last="Bouzigon">Emmanuelle Bouzigon</name>
<name sortKey="Demenais, Florence" sort="Demenais, Florence" uniqKey="Demenais F" first="Florence" last="Demenais">Florence Demenais</name>
<name sortKey="Demenais, Florence" sort="Demenais, Florence" uniqKey="Demenais F" first="Florence" last="Demenais">Florence Demenais</name>
<name sortKey="Demenais, Florence" sort="Demenais, Florence" uniqKey="Demenais F" first="Florence" last="Demenais">Florence Demenais</name>
<name sortKey="Dizier, Marie Helene" sort="Dizier, Marie Helene" uniqKey="Dizier M" first="Marie-Hélène" last="Dizier">Marie-Hélène Dizier</name>
<name sortKey="Dizier, Marie Helene" sort="Dizier, Marie Helene" uniqKey="Dizier M" first="Marie-Hélène" last="Dizier">Marie-Hélène Dizier</name>
<name sortKey="Kauffmann, Francine" sort="Kauffmann, Francine" uniqKey="Kauffmann F" first="Francine" last="Kauffmann">Francine Kauffmann</name>
<name sortKey="Kauffmann, Francine" sort="Kauffmann, Francine" uniqKey="Kauffmann F" first="Francine" last="Kauffmann">Francine Kauffmann</name>
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<region name="Angleterre">
<name sortKey="Forabosco, Paola" sort="Forabosco, Paola" uniqKey="Forabosco P" first="Paola" last="Forabosco">Paola Forabosco</name>
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<name sortKey="Cookson, William Ocm" sort="Cookson, William Ocm" uniqKey="Cookson W" first="William Ocm" last="Cookson">William Ocm Cookson</name>
<name sortKey="Evans, David M" sort="Evans, David M" uniqKey="Evans D" first="David M." last="Evans">David M. Evans</name>
<name sortKey="Lewis, Cathryn M" sort="Lewis, Cathryn M" uniqKey="Lewis C" first="Cathryn M." last="Lewis">Cathryn M. Lewis</name>
<name sortKey="Lewis, Cathryn M" sort="Lewis, Cathryn M" uniqKey="Lewis C" first="Cathryn M." last="Lewis">Cathryn M. Lewis</name>
<name sortKey="Moffatt, Miriam" sort="Moffatt, Miriam" uniqKey="Moffatt M" first="Miriam" last="Moffatt">Miriam Moffatt</name>
<name sortKey="Ng, Mandy Y" sort="Ng, Mandy Y" uniqKey="Ng M" first="Mandy Y." last="Ng">Mandy Y. Ng</name>
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